FastQCFastQC Report
Wed 20 Dec 2023
JX-9_S9_L003_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameJX-9_S9_L003_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63985021
Total Bases9.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1936780.3026927192850339No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1922460.30045469548255677No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1601130.2502351292500162No Hit
CGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCCGCG1580690.24704063158782116No Hit
CACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAG1571720.24563874097970523No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1540310.24072977955262373No Hit
CGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAG1229940.19222311421918575No Hit
AGGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACC1147270.17930290278407504No Hit
GCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCC1108720.17327805518732267No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1093230.17085717608813475No Hit
CGACCCTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGG1042710.16296157814811063No Hit
CCCGACCCTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGA1035910.16189882941509076No Hit
CGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCCG1012630.15826047787028152No Hit
CGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGC963590.15059618406626762No Hit
GGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCG954630.14919585632393556No Hit
CCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCC909420.14213014011513725No Hit
CTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGA905610.14153468825148938No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA904470.14135652155213013No Hit
CCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACG883370.13805887474820083No Hit
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC809410.12649991941082586No Hit
CCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGG793870.12407122598271868No Hit
CTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGA765830.11968895032479555No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC727430.11368754571480097No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG696880.1089129907451308No Hit
CGAGGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGA691270.1080362230403894No Hit
GCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCCGC689830.1078111703675146No Hit
CCCTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGG687390.10742983111625454No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC684460.10697191144158567No Hit
GGCGAGGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGG683830.10687345089720295No Hit
CCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGGCCCCGCGGCGGGCC672910.10516680146123575No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC671260.10490892860690006No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA667820.1043713027772547No Hit
CGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAGAG640330.10007498473744347No Hit
CTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGA640160.10004841601911799No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)