FastQCFastQC Report
Wed 20 Dec 2023
JX-9_S9_L003_R1_001.trim.paired.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameJX-9_S9_L003_R1_001.trim.paired.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61847120
Total Bases9 Gbp
Sequences flagged as poor quality0
Sequence length50-151
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1931830.3123556925528626No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1913620.3094113355642106No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1592270.2574525701439291No Hit
CACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAG1550280.2506632483452746No Hit
CGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCCGCG1542400.24938913889603914No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1532600.24780458653531484No Hit
CGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAG1207550.1952475717543517No Hit
AGGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACC1113350.18001646640943023No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG1088170.17594513697646713No Hit
GCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCC1079710.17457724789771942No Hit
CGACCCTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGG1029170.16640548500884117No Hit
CCCGACCCTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGA1022570.16533833750059823No Hit
CGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCCG985460.1593380581019779No Hit
CGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGC936590.1514363158704884No Hit
GGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCG926370.1497838541228759No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA900260.1455621539046604No Hit
CTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGA892750.1443478693914931No Hit
CCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCC883270.14281505751601692No Hit
CCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACG868800.14047541744870254No Hit
CGGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGC805560.1302502040515387No Hit
CCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGG780830.12625163467595582No Hit
CTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGA753060.12176153069051558No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC724000.11706284787391878No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG694490.11229140499994178No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC679640.10989032310639525No Hit
CCCTTCTCCCCCCGCCGCCGCCCCCACGCGGCGCTCCCCCGGGGAGGGGG675710.10925488527194153No Hit
GCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGACCGGCCCGC673370.10887653297356448No Hit
CGAGGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGGGA672650.10876011688175619No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC669120.10818935465386262No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA664370.10742133182596053No Hit
GGCGAGGCGCCGCGCGGAACCGCGGCCCCGGGGGCGGACCCGGCGGGGGG660500.10679559533249082No Hit
CGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAGAG633710.10246394658312302No Hit
CCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGGCCCCGCGGCGGGCC632770.10231195890770661No Hit
CTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGAGAGAGAGAGAGA632270.10223111439950641No Hit
CCCCACGCGGCGCTCCCCCGGGGAGGGGGGAGGACGGGGAGCGGGGGAGA631870.10216643879294622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)