FastQCFastQC Report
Thu 11 May 2023
1a_S1_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename1a_S1_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30635375
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG437510.1428120269459734No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA409350.13362003892558846No Hit
CGCGAGCGAAGCCGTCGGGGGTGGGACAGGACCAGGCGGGACAGAGAGCG333920.10899817612808722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)