FastQCFastQC Report
Thu 21 Dec 2023
JX-1_S1_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameJX-1_S1_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105753598
Total Bases15.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA2863280.2707501261564642No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG2352530.2224538970295838No Hit
CTCCAAACCACAGCTCCTCCCGCCCGCCGAGCCGACTTTCTTACCCCTCG1813480.17148163601960853No Hit
CGCGAGCGAAGCCGTCGGGGGTGGGACAGGACCAGGCGGGACAGAGAGCG1361340.128727535114219No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1272080.12028716034796282No Hit
CCCCTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAAC1203570.11380889376454123No Hit
CTCCGTTCTCGCCCTCGCTCTCCCTCCACACAAGCCGGAGGGTGCGCGGC1118580.10577228776651174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)