FastQCFastQC Report
Thu 21 Dec 2023
JX-4_S4_L003_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameJX-4_S4_L003_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10057238
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC53

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG303190.30146447762298156No Hit
CCCCTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAAC190010.18892861041967984No Hit
CCCTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAACG124810.12409967826156644No Hit
CGGAAAGAGAAGCGCGACACCGGCGAGACAGTCAAACCACGCGGGAGGGA105340.10474048640392124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)