FastQCFastQC Report
Thu 21 Dec 2023
JX-4_S4_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameJX-4_S4_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103216397
Total Bases15.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG3224780.3124290416763918No Hit
CCCCTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAAC1919290.1859481686809897No Hit
CCCTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAACG1288300.12481543993441274No Hit
CGGAAAGAGAAGCGCGACACCGGCGAGACAGTCAAACCACGCGGGAGGGA1263800.1224417860662197No Hit
GTGCATGCGGCCGGACCGACCCCGTCGGGGTCCGACAAAACCCGTCCGCG1225640.1187446990617198No Hit
GCGGAAAGAGAAGCGCGACACCGGCGAGACAGTCAAACCACGCGGGAGGG1044920.10123585305927701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)