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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        About MultiQC

        This report was generated using MultiQC, version 1.12

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-03-29, 17:22 based on data in: /blue/licht/runs/Evans-MDS/GE7334/GE7334

        General Statistics

        Showing 13/13 rows and 6/8 columns.
        Sample Name% AlignedM Aligned% DuplicationGC content% PF% Adapter
        11-Undiff_S11_L006_R1_001
        30.4%
        59.4%
        84.3%
        29.8%
        K3.star
        75.1%
        29.6
        K4.star
        76.0%
        31.4
        K5.star
        76.0%
        32.0
        P2.star
        74.2%
        24.1
        P3.star
        72.8%
        23.8
        P4.star
        73.3%
        25.4
        S1.star
        72.2%
        25.2
        S11.star
        74.2%
        25.8
        S47.star
        74.1%
        27.2
        S53.star
        75.5%
        30.4
        S65.star
        71.7%
        24.0
        S66.star
        74.9%
        26.9

        STAR

        STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.

        Alignment Scores

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        fastp

        fastp An ultra-fast all-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).DOI: 10.1093/bioinformatics/bty560.

        Filtered Reads

        Filtering statistics of sampled reads.

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        Insert Sizes

        Insert size estimation of sampled reads.

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        Sequence Quality

        Average sequencing quality over each base of all reads.

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        GC Content

        Average GC content over each base of all reads.

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        N content

        Average N content over each base of all reads.

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        MultiQC v1.12 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.