Information for 6-CATGGHGR (Motif 10)


Reverse Opposite:

p-value:1e-321
log p-value:-7.404e+02
Information Content per bp:1.431
Number of Target Sequences with motif22916.0
Percentage of Target Sequences with motif28.86%
Number of Background Sequences with motif18266.6
Percentage of Background Sequences with motif22.98%
Average Position of motif in Targets162.7 +/- 85.6bp
Average Position of motif in Background164.4 +/- 97.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0058.2_MAX/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CATGGHGR
AAGCACATGG---

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CATGGHGR
NGTTGCCATGGCAA

MA0147.2_Myc/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGHGR
AAGCACATGG---

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CATGGHGR
GGTTGCCATGGCAA

MA0509.1_Rfx1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CATGGHGR-
GTTGCCATGGCAAC

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATGGHGR
AGTCACGC---

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------CATGGHGR-
KGTTGCCATGGCAAC

PB0158.1_Rfx3_2/Jaspar

Match Rank:8
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CATGGHGR--------
ACTGACCCTTGGTTACCACAAAG

MA0600.1_RFX2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CATGGHGR------
GTTGCCATGGCAACCGCGG

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGHGR---
GTTGCCATGGCAACCG