Information for 10-AGGCAGGC (Motif 16)


Reverse Opposite:

p-value:1e-220
log p-value:-5.071e+02
Information Content per bp:1.835
Number of Target Sequences with motif38226.0
Percentage of Target Sequences with motif48.14%
Number of Background Sequences with motif33828.7
Percentage of Background Sequences with motif42.55%
Average Position of motif in Targets164.3 +/- 84.4bp
Average Position of motif in Background163.6 +/- 99.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGCAGGC--
AAGGCAAGTGT

MA0598.1_EHF/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGCAGGC
CAGGAAGG-

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGGCAGGC-
-GGCGCGCT

MA0597.1_THAP1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAGGC
TNNGGGCAG--

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGCAGGC--
TBGCACGCAA

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGGCAGGC----
NAGANTGGCGGGGNGNA

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGGCAGGC-----
NGTAGGTTGGCATNNN

MA0146.2_Zfx/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGGCAGGC---------
---CAGGCCNNGGCCNN

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGGCAGGC-----
SCAGYCADGCATGAC

MA0516.1_SP2/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------AGGCAGGC-
GGGNGGGGGCGGGGC