Information for 12-AGGAGAAT (Motif 20)


Reverse Opposite:

p-value:1e-168
log p-value:-3.879e+02
Information Content per bp:1.922
Number of Target Sequences with motif19592.0
Percentage of Target Sequences with motif24.67%
Number of Background Sequences with motif16382.2
Percentage of Background Sequences with motif20.61%
Average Position of motif in Targets164.4 +/- 88.8bp
Average Position of motif in Background163.1 +/- 98.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGGAGAAT---
TTGACCGAGAATTCC

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGAAT---
GNNACCGAGAATNNN

MA0152.1_NFATC2/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGAGAAT
TGGAAAA-

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGGAGAAT---
--GACAATGNN

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGAGAAT-----
TTTAGAACAATAAAAT

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGAGAAT-----
TTAAGAACAATAAATT

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGAAT-----
NNNNNGAACAATTGANN

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGGAGAAT--
GGGAGGACNG

MA0515.1_Sox6/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGGAGAAT--
AAAACAATGG

MA0467.1_Crx/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGGAGAAT--
AAGAGGATTAG