Information for 14-GCACAGAAGTCW (Motif 22)


Reverse Opposite:

p-value:1e-160
log p-value:-3.703e+02
Information Content per bp:1.785
Number of Target Sequences with motif839.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif279.2
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets163.6 +/- 89.2bp
Average Position of motif in Background165.8 +/- 104.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAAGTCW
CGAAGCACACAAAATA

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCACAGAAGTCW
-CACAGN-----

MA0512.1_Rxra/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCACAGAAGTCW--
---CAAAGGTCAGA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAAGTCW
CCAGGAACAG------

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCACAGAAGTCW----
NTNNNAGGAGTCTCNTN

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCACAGAAGTCW-
GAGCACAGCAGGACA

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCACAGAAGTCW---
AAGGCCAGATGGTCCGG

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCACAGAAGTCW
AGCGGCACACACGCAA

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCACAGAAGTCW-
CCACACAGCAGGAGA

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCACAGAAGTCW
GAGGTCAAAGGTCA