Information for 19-TGATTTCTGCAT (Motif 25)


Reverse Opposite:

p-value:1e-118
log p-value:-2.725e+02
Information Content per bp:1.969
Number of Target Sequences with motif362.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif79.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets173.7 +/- 90.4bp
Average Position of motif in Background168.5 +/- 87.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TGATTTCTGCAT
TNNNATGATTTCNNCNN

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGATTTCTGCAT
TGAATTATGCAT

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGATTTCTGCAT---
ANATTTTTGCAANTN

MA0038.1_Gfi1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGATTTCTGCAT
CNGTGATTTN-----

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGATTTCTGCAT-----
TNNATTATGCATANNTT

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGATTTCTGCAT
TGATTTATGGC-

PH0014.1_Cphx/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGATTTCTGCAT
NTTGATTNNATCAN

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGATTTCTGCAT-
NNNCTGATATCTCNNNN

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGATTTCTGCAT
TGATTTATGGCC

MA0485.1_Hoxc9/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTCTGCAT
NTGATTTATGGCC