Information for 13-CRGGCTTAAM (Motif 26)


Reverse Opposite:

p-value:1e-117
log p-value:-2.713e+02
Information Content per bp:1.568
Number of Target Sequences with motif1107.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif507.6
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets165.1 +/- 96.9bp
Average Position of motif in Background165.7 +/- 101.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CRGGCTTAAM
AGCAACAGCCGCACC

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CRGGCTTAAM
CAAGCTT---

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CRGGCTTAAM
CCAGACRSVB-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CRGGCTTAAM
BCAGACWA---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CRGGCTTAAM
CCAGACAG---

MA0131.1_HINFP/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CRGGCTTAAM
GCGGACGTTN-

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CRGGCTTAAM
--NGCTN---

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CRGGCTTAAM
CNAGGCCT---

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CRGGCTTAAM-
CAAATCCAGACATCACA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CRGGCTTAAM
CACGCA----