Information for 18-TACTCAAGCC (Motif 30)


Reverse Opposite:

p-value:1e-83
log p-value:-1.915e+02
Information Content per bp:1.530
Number of Target Sequences with motif386.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif119.7
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets148.4 +/- 81.4bp
Average Position of motif in Background164.2 +/- 97.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TACTCAAGCC
AGCCACTCAAG--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TACTCAAGCC
RSCACTYRAG--

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TACTCAAGCC
TACTNNNN--

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TACTCAAGCC
ATACTTA----

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TACTCAAGCC
NCCACTTAN---

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TACTCAAGCC
AAGCACTTAA---

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TACTCAAGCC
AASCACTCAA---

MA0099.2_JUN::FOS/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TACTCAAGCC
TGACTCA----

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TACTCAAGCC
-----CAGCC

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TACTCAAGCC--
--ATCACCCCAT