Information for 20-TCCATACATC (Motif 32)


Reverse Opposite:

p-value:1e-80
log p-value:-1.852e+02
Information Content per bp:1.975
Number of Target Sequences with motif344.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif100.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets156.5 +/- 105.1bp
Average Position of motif in Background162.3 +/- 108.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCCATACATC-
GGCCATAAATCA

MA0594.1_Hoxa9/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCCATACATC-
GCCATAAATCA

MA0485.1_Hoxc9/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCCATACATC--
GGCCATAAATCAC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCCATACATC-
GGCCATAAATCA

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCCATACATC---
CAAATCCAGACATCACA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TCCATACATC--
GYCATCMATCAT

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCATACATC--------
-TCACCCATCAATAAACA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCCATACATC-
-TCATCAATCA

PB0028.1_Hbp1_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCCATACATC--
NNCATTCATTCATNNN

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCCATACATC-
RGCCATYAATCA