Information for 22-CCRCCATTGCTS (Motif 34)


Reverse Opposite:

p-value:1e-72
log p-value:-1.660e+02
Information Content per bp:1.700
Number of Target Sequences with motif520.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif210.4
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets166.3 +/- 79.1bp
Average Position of motif in Background179.1 +/- 96.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCRCCATTGCTS
---CCATTGTTC

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCRCCATTGCTS
---CCTTTGTT-

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCRCCATTGCTS
--NCCATTGTTC

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCRCCATTGCTS-
---RCATTCCWGG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCRCCATTGCTS
---CCWTTGTY-

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCRCCATTGCTS-
---RCATTCCWGG

MA0090.1_TEAD1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCRCCATTGCTS--
--CACATTCCTCCG

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCRCCATTGCTS---
TGTTCCCATTGTGTACT

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CCRCCATTGCTS
TACGCCCCGCCACTCTG-

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCRCCATTGCTS-
---GCATTCCAGN