Information for 23-CAGAGGTGGAGY (Motif 36)


Reverse Opposite:

p-value:1e-47
log p-value:-1.098e+02
Information Content per bp:1.801
Number of Target Sequences with motif348.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif142.5
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets159.6 +/- 95.3bp
Average Position of motif in Background161.4 +/- 99.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CAGAGGTGGAGY
-----GTGGAT-

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CAGAGGTGGAGY----
-----CTTGAGTGGCT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CAGAGGTGGAGY---
-----CTYRAGTGSY

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAGAGGTGGAGY---
GCGGAGGTGTCGCCTC

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGAGGTGGAGY----
-AGATGKDGAGATAAG

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGAGGTGGAGY--
AGGGGGCGGGGCTG

MA0079.3_SP1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CAGAGGTGGAGY
-GGGGGCGGGGC

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CAGAGGTGGAGY----
------TTGAGTGSTT

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:CAGAGGTGGAGY
------CGGAGC

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGAGGTGGAGY
CGGAAGTGAAAC