Information for 3-CCATSYTGGCCA (Motif 4)


Reverse Opposite:

p-value:1e-506
log p-value:-1.166e+03
Information Content per bp:1.654
Number of Target Sequences with motif27641.0
Percentage of Target Sequences with motif34.81%
Number of Background Sequences with motif21475.4
Percentage of Background Sequences with motif27.01%
Average Position of motif in Targets164.3 +/- 80.8bp
Average Position of motif in Background164.4 +/- 91.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0095.2_YY1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CCATSYTGGCCA
GCNGCCATCTTG----

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CCATSYTGGCCA
GCCGCCATCTTG----

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CCATSYTGGCCA
-----TTGGCA-

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCATSYTGGCCA
NAGGTCACNNTGACC-

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCATSYTGGCCA
----CTTGGCAA

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCATSYTGGCCA
--AAYTAGGTCA

MA0258.2_ESR2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCATSYTGGCCA
AGGNCANNGTGACCT

MA0112.2_ESR1/Jaspar

Match Rank:8
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------CCATSYTGGCCA
GGCCCAGGTCACCCTGACCT

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCATSYTGGCCA
-CCGATTGGCT-

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CCATSYTGGCCA----
----ACTAGCCAATCA