Information for 25-CCCCGTCTGRGA (Motif 40)


Reverse Opposite:

p-value:1e-31
log p-value:-7.158e+01
Information Content per bp:1.689
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif44.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets162.2 +/- 85.7bp
Average Position of motif in Background161.3 +/- 85.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)2.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCCCGTCTGRGA
--CTGTCTGG--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCCGTCTGRGA
VBSYGTCTGG--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCCCGTCTGRGA---
-----CSTGGGAAAD

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCCGTCTGRGA-
---GGTCTGGCAT

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCCCGTCTGRGA
CCCCCTGCTGTG-

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCCCGTCTGRGA-----
--GNNACCGAGAATNNN

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCCCGTCTGRGA---
----TTCTTGGAAAN

MA0144.2_STAT3/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCCCGTCTGRGA--
---CTTCTGGGAAA

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCCCGTCTGRGA---
NNTNNTGTCTGGNNTNG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCCCGTCTGRGA
--TWGTCTGV--