Information for 2-CGTCTCTACT (Motif 5)


Reverse Opposite:

p-value:1e-469
log p-value:-1.082e+03
Information Content per bp:1.668
Number of Target Sequences with motif23775.0
Percentage of Target Sequences with motif29.94%
Number of Background Sequences with motif18129.4
Percentage of Background Sequences with motif22.80%
Average Position of motif in Targets164.7 +/- 79.2bp
Average Position of motif in Background163.0 +/- 88.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGTCTCTACT-
AGGTCTCTAACC

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGTCTCTACT---
NTNNCGTATCCAAGTNN

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CGTCTCTACT----
------TACTNNNN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGTCTCTACT--
--TGTTTACTTT

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGTCTCTACT--
--TGTTTACTTT

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGTCTCTACT-
NYYTGTTTACHN

MA0148.3_FOXA1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGTCTCTACT---
TCCATGTTTACTTTG

MA0122.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CGTCTCTACT---
----NCCACTTAN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGTCTCTACT
VBSYGTCTGG---

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGTCTCTACT------
TNNTGCTACTGTNNNN