Information for 3-CCTGGCYAAY (Motif 7)


Reverse Opposite:

p-value:1e-431
log p-value:-9.932e+02
Information Content per bp:1.812
Number of Target Sequences with motif27014.0
Percentage of Target Sequences with motif34.02%
Number of Background Sequences with motif21347.5
Percentage of Background Sequences with motif26.85%
Average Position of motif in Targets164.5 +/- 78.9bp
Average Position of motif in Background164.1 +/- 91.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCTGGCYAAY--
ACTAGCCAATCA

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCTGGCYAAY---
---AGCCAATCGG

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTGGCYAAY
---TGCCAA-

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTGGCYAAY---
ACCGTGACTAATTNN

PH0098.1_Lhx8/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGGCYAAY-------
CACCGCTAATTAGNNGN

MA0502.1_NFYB/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCTGGCYAAY---
AAATGGACCAATCAG

PH0032.1_Evx2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTGGCYAAY-------
CACCGCTAATTAGCGGT

MA0510.1_RFX5/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCYAAY--
CTCCCTGGCAACAGC

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCTGGCYAAY-
-----CTAATT

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCTGGCYAAY---
TACGCCCCGCCACTCTG