Information for 3-GGTTGATC (Motif 8)


Reverse Opposite:

p-value:1e-410
log p-value:-9.462e+02
Information Content per bp:1.666
Number of Target Sequences with motif32521.0
Percentage of Target Sequences with motif40.96%
Number of Background Sequences with motif26687.3
Percentage of Background Sequences with motif33.57%
Average Position of motif in Targets164.5 +/- 86.7bp
Average Position of motif in Background164.9 +/- 97.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGTTGATC------
ACCGGTTGATCACCTGA

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGTTGATC-
CGTGGGTGGTCC

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GGTTGATC-----
NNANTGGTGGTCTTNNN

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGTTGATC---
NNANTGATTGATNTTN

MA0130.1_ZNF354C/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGTTGATC
-GTGGAT-

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTTGATC-
NTATYGATCH

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGTTGATC---
NNANTGATTGATNNNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGTTGATC-
-GCTAATCC

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGATC-------
AGGCTAATCCCCAANG

MA0595.1_SREBF1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGTTGATC
GTGGGGTGAT-