Information for 5-CTGCCKGCGCGG (Motif 12)


Reverse Opposite:

p-value:1e-11
log p-value:-2.683e+01
Information Content per bp:1.781
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif431.5
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets645.9 +/- 300.6bp
Average Position of motif in Background710.6 +/- 327.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTGCCKGCGCGG--
ATGCCCGGGCATGT

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCKGCGCGG-
ANTGCGGGGGCGGN

MA0506.1_NRF1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGCCKGCGCGG
GCGCCTGCGCA-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCCKGCGCGG
CTGTCTGG----

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGCCKGCGCGG
GCTGTG-------

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGCCKGCGCGG
VGCTGWCAVB----

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGCCKGCGCGG
GCGCATGCGCAG

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCKGCGCGG-
NNGCNCTGCGCGGC

MA0472.1_EGR2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTGCCKGCGCGG---
GTGCGTGGGCGGGNG

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTGCCKGCGCGG
-TGCGTGGGYG-