Information for 6-GTCCTTGGAGGM (Motif 13)


Reverse Opposite:

p-value:1e-11
log p-value:-2.667e+01
Information Content per bp:1.562
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif123.6
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets532.2 +/- 313.6bp
Average Position of motif in Background617.6 +/- 305.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTTGGAGGM
TGACCTTGAN---

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTTGGAGGM
TGACCTTGAV---

MA0154.2_EBF1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTCCTTGGAGGM
-TCCCTGGGGAN

MA0592.1_ESRRA/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTCCTTGGAGGM
NGTGACCTTGG----

MA0505.1_Nr5a2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTCCTTGGAGGM
GCTGACCTTGAACTN

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTTGGAGGM--
TGWCCTCARNTGACC

MA0141.2_Esrrb/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCCTTGGAGGM
TGACCTTGANNN-

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTCCTTGGAGGM
NTGACCTTGA----

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GTCCTTGGAGGM
NNNNATGACCTTGANTN-

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GTCCTTGGAGGM
CTGACCTTTG----