Information for 7-RCTCGGTCTGAG (Motif 16)


Reverse Opposite:

p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.676
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif58.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets631.6 +/- 271.4bp
Average Position of motif in Background676.8 +/- 298.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RCTCGGTCTGAG
---CTGTCTGG-

MA0524.1_TFAP2C/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:RCTCGGTCTGAG------
---TGCCCTGGGGCNANN

MA0146.2_Zfx/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----RCTCGGTCTGAG
GGGGCCGAGGCCTG--

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:RCTCGGTCTGAG
------GCTGTG

POL002.1_INR/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:RCTCGGTCTGAG
---NNNANTGA-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RCTCGGTCTGAG
---TWGTCTGV-

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:RCTCGGTCTGAG
-VBSYGTCTGG-

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RCTCGGTCTGAG--
--ATGCCCTGAGGC

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RCTCGGTCTGAG--
--WTGSCCTSAGGS

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:RCTCGGTCTGAG--
----GGTCTGGCAT