Information for 8-CTGGAGGGGCGA (Motif 18)


Reverse Opposite:

p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.750
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif3.21%
Number of Background Sequences with motif499.8
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets599.2 +/- 274.8bp
Average Position of motif in Background624.4 +/- 324.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGGAGGGGCGA-
NAGANTGGCGGGGNGNA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGGAGGGGCGA
CTTGAGTGGCT-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGGAGGGGCGA
CTYRAGTGSY--

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGGAGGGGCGA
GTGGAT------

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGGAGGGGCGA
-TTGAGTGSTT-

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGGAGGGGCGA
-GGGAGGACNG-

MA0154.2_EBF1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTGGAGGGGCGA
TCCCTGGGGAN----

MA0079.3_SP1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGAGGGGCGA
GGGGGCGGGGC--

MA0599.1_KLF5/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGGAGGGGCGA
GGGGNGGGGC--

PB0025.1_Glis2_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTGGAGGGGCGA--
NTNTGGGGGGTCNNNA