Information for 1-AACTTGWTTT (Motif 2)


Reverse Opposite:

p-value:1e-13
log p-value:-3.188e+01
Information Content per bp:1.497
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif8.46%
Number of Background Sequences with motif1927.5
Percentage of Background Sequences with motif4.31%
Average Position of motif in Targets427.0 +/- 278.0bp
Average Position of motif in Background460.2 +/- 283.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AACTTGWTTT
YTAATYNRATTA

MA0157.1_FOXO3/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AACTTGWTTT--
----TGTTTACA

MA0480.1_Foxo1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AACTTGWTTT--
-TCCTGTTTACA

PH0037.1_Hdx/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AACTTGWTTT------
TNNNATGATTTCNNCNN

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AACTTGWTTT
TAATTGATTA

MA0593.1_FOXP2/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AACTTGWTTT---
--TNTGTTTACTT

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AACTTGWTTT
GTAATCDGATTA

MA0038.1_Gfi1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AACTTGWTTT-
-CNGTGATTTN

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AACTTGWTTT---
----TGTTTATTT

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AACTTGWTTT----
----TGGTTTCAGT