Information for 13-TATTATTGTGAA (Motif 26)


Reverse Opposite:

p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.852
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif91.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets498.0 +/- 312.7bp
Average Position of motif in Background540.4 +/- 263.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TATTATTGTGAA--
CTATAATTGTTAGCG

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TATTATTGTGAA
-CTCATTGTC--

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TATTATTGTGAA
NNNTGTTGTTGTTNG

MA0084.1_SRY/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TATTATTGTGAA-
----ATTGTTTAN

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TATTATTGTGAA-
TAATTGTTCTAAAC

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TATTATTGTGAA-
TTCAATTGTTCTAAAA

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TATTATTGTGAA
GTATCTATTGTTCTTTA

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TATTATTGTGAA--
GTNTTGTTGTGANNT

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TATTATTGTGAA
AATTATT-----

MA0102.3_CEBPA/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TATTATTGTGAA--
---NATTGTGCAAT