Information for 17-CTACTCTGTCCT (Motif 29)


Reverse Opposite:

p-value:1e-10
log p-value:-2.314e+01
Information Content per bp:1.851
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif56.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets564.2 +/- 273.7bp
Average Position of motif in Background584.1 +/- 271.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CTACTCTGTCCT---
-----CTGTTCCTGG

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTACTCTGTCCT
-TACTNNNN---

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CTACTCTGTCCT
------TGACCT

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTACTCTGTCCT
--YCTTTGTTCC

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTACTCTGTCCT---
-----CTGACCTTTG

MA0442.1_SOX10/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CTACTCTGTCCT
---CTTTGT---

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTACTCTGTCCT-
-----GTGACCTT

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CTACTCTGTCCT
TNNTGCTACTGTNNNN-

PB0051.1_Osr2_1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CTACTCTGTCCT
CNNNGCTACTGTANNN-

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTACTCTGTCCT---
TGGACTTTGNNCTNTG