Information for 2-CCTCCTATTTTA (Motif 3)


Reverse Opposite:

p-value:1e-13
log p-value:-3.134e+01
Information Content per bp:1.863
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets412.7 +/- 205.6bp
Average Position of motif in Background557.5 +/- 232.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CCTCCTATTTTA--
----CTATTTTTGG

PB0106.1_Arid5a_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCTCCTATTTTA--
TNNTTTCGTATTNNANN

MA0497.1_MEF2C/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTCCTATTTTA-----
--TTCTATTTTTAGNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTCCTATTTTA---
---KCTATTTTTRGH

MA0052.2_MEF2A/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTCCTATTTTA----
-NNGCTATTTTTAGCN

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCTCCTATTTTA-
NTCNTCCCCTATNNGNN

PB0181.1_Spdef_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCTCCTATTTTA
GATAACATCCTAGTAG-

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTCCTATTTTA---
TATCATAATTAAGGA

MA0033.1_FOXL1/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CCTCCTATTTTA-
-----TATGTNTA

MA0080.3_Spi1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCTCCTATTTTA
NCACTTCCTCTTTTN