Information for 18-GACTAGCAATCC (Motif 30)


Reverse Opposite:

p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.857
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif19.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets478.2 +/- 264.2bp
Average Position of motif in Background506.0 +/- 347.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACTAGCAATCC-
-ACTACAATTCCC

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GACTAGCAATCC-----
GANNATTAATCCCTNNN

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GACTAGCAATCC-----
GNNNATTAATCCCTNCN

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GACTAGCAATCC-
-AGATGCAATCCC

MA0087.1_Sox5/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GACTAGCAATCC
---NAACAAT--

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GACTAGCAATCC---
-----CAAATCACTG

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GACTAGCAATCC--
------TAATCCCN

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GACTAGCAATCC-----
-----SSAATCCACANN

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GACTAGCAATCC---
-----RCATTCCWGG

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GACTAGCAATCC-
-----YTAATCCY