Information for 17-WAATTRACWC (Motif 34)


Reverse Opposite:

p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.740
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif6.16%
Number of Background Sequences with motif1484.6
Percentage of Background Sequences with motif3.32%
Average Position of motif in Targets496.2 +/- 285.5bp
Average Position of motif in Background484.2 +/- 283.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0031.1_Hoxa3_1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--WAATTRACWC--
GTTAATTANCTCNN

PH0020.1_Dlx1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--WAATTRACWC--
ATTAATTANCTCAN

PH0050.1_Hoxa3/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--WAATTRACWC--
ACTAATTANCNCNA

PH0079.1_Hoxd3/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----WAATTRACWC--
ANGNTAATTANCNCAN

PH0176.1_Vsx1/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------WAATTRACWC-
ANTNATTAATTAACTNG

PH0054.1_Hoxa7_1/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------WAATTRACWC-
GNNNATTAATTAANNCG

PH0010.1_Alx1_1/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------WAATTRACWC-
GNNNATTAATTAATNCG

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----WAATTRACWC--
CAGGTAATTACCTCAG

PH0024.1_Dlx5/Jaspar

Match Rank:9
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------WAATTRACWC
NANNGNTAATTACCNN

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------WAATTRACWC-
GNTNNCTAATTAGNNCG