Information for 22-CGCCGGAGAA (Motif 37)


Reverse Opposite:

p-value:1e-7
log p-value:-1.614e+01
Information Content per bp:1.976
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif39.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets628.4 +/- 335.0bp
Average Position of motif in Background682.6 +/- 277.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0028.1_ELK1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGCCGGAGAA
GAGCCGGAAG-

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCCGGAGAA
GGCGGGAARN

PB0179.1_Sp100_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCCGGAGAA---
TCCGTCGCTTAAAAG

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGGAGAA----
GNNACCGAGAATNNN

MA0470.1_E2F4/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCCGGAGAA
GGGCGGGAAGG

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCCGGAGAA
GGCGGGAAAH

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGCCGGAGAA-
-RCCGGAARYN

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGGAGAA-
TGGCGGGAAAHB

MA0469.1_E2F3/Jaspar

Match Rank:9
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------CGCCGGAGAA
NNGTGNGGGCGGGAG--

MA0154.2_EBF1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGGAGAA
TCCCTGGGGAN