Information for 22-AYGCSATATAGG (Motif 38)


Reverse Opposite:

p-value:1e-6
log p-value:-1.475e+01
Information Content per bp:1.470
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif3.91%
Number of Background Sequences with motif907.7
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets467.8 +/- 285.6bp
Average Position of motif in Background500.2 +/- 285.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AYGCSATATAGG
AAGCCATAAAA-

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AYGCSATATAGG---
-TNCCATATATGGNA

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AYGCSATATAGG-
-TNCCATATATGG

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AYGCSATATAGG
-CCAAAAATAG-

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AYGCSATATAGG-
---CCATATATGG

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AYGCSATATAGG---
-----AAYTAGGTCA

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AYGCSATATAGG-----
ATGGGATATATCCGCCT

PB0127.1_Gata6_2/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AYGCSATATAGG---
NGCTGCGATATCGNCGC

MA0083.2_SRF/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AYGCSATATAGG----
CATGCCCAAATAAGGCAA

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AYGCSATATAGG------
---GTATAAAAGGCGGGG