Information for 5-GCATCGGC (Motif 39)


Reverse Opposite:

p-value:1e-5
log p-value:-1.189e+01
Information Content per bp:1.964
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif523.9
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets595.1 +/- 296.7bp
Average Position of motif in Background623.1 +/- 343.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0117.1_Mafb/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCATCGGC
NCGTCAGC

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCATCGGC-
CCGATTGGCT

NRF(NRF)/Promoter/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCATCGGC--
GCGCATGCGCAC

MA0048.1_NHLH1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCATCGGC--
NCGCAGCTGCGN

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCATCGGC-----
CTCAGCAGCTGCTACTG

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCATCGGC-
-YAACBGCC

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCATCGGC-
-CAGCTGNT

PB0036.1_Irf6_1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GCATCGGC---
NNNTTGGTTTCGNTNNN

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCGGC----
CCNNACCATCTGGCCTN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCATCGGC---
NVCAGCTGBBNN