Information for 2-NCCBCCTCSC (Motif 4)


Reverse Opposite:

p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.476
Number of Target Sequences with motif480.0
Percentage of Target Sequences with motif25.70%
Number of Background Sequences with motif8253.3
Percentage of Background Sequences with motif18.47%
Average Position of motif in Targets690.2 +/- 271.5bp
Average Position of motif in Background659.5 +/- 347.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--NCCBCCTCSC--
NTGCCCTAGGGCAA

MA0003.2_TFAP2A/Jaspar

Match Rank:2
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----NCCBCCTCSC-
CATTGCCTCAGGGCA

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:NCCBCCTCSC--
GCCTCAGGGCAT

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--NCCBCCTCSC--
NTGCCCTTGGGCGN

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:NCCBCCTCSC
-CCCCCCCC-

MA0155.1_INSM1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-NCCBCCTCSC-
CGCCCCCTGACA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------NCCBCCTCSC---
CNNBRGCGCCCCCTGSTGGC

MA0057.1_MZF1_5-13/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-NCCBCCTCSC
TTCCCCCTAC-

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-NCCBCCTCSC---
NAGCCCCGCCCCCN

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:NCCBCCTCSC--
SCCTSAGGSCAW