Information for 3-CCAGGCGGCAGC (Motif 6)


Reverse Opposite:

p-value:1e-12
log p-value:-2.991e+01
Information Content per bp:1.689
Number of Target Sequences with motif210.0
Percentage of Target Sequences with motif11.24%
Number of Background Sequences with motif2911.4
Percentage of Background Sequences with motif6.51%
Average Position of motif in Targets648.0 +/- 311.2bp
Average Position of motif in Background652.2 +/- 350.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0024.2_E2F1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAGGCGGCAGC
-CGGGCGGGAGG

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCAGGCGGCAGC----
GCCASCAGGGGGCGCYVNNG

MA0146.2_Zfx/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCAGGCGGCAGC---
-CAGGCCNNGGCCNN

POL011.1_XCPE1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCAGGCGGCAGC
--GGGCGGGACC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CCAGGCGGCAGC--
TGGCCACCAGGTGGCACTNT

MA0469.1_E2F3/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCAGGCGGCAGC
NNGTGNGGGCGGGAG-

MA0117.1_Mafb/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CCAGGCGGCAGC
----NCGTCAGC

MA0471.1_E2F6/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCAGGCGGCAGC-
--GGGCGGGAAGG

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCAGGCGGCAGC
GTGCCACGCGACTG-

MA0139.1_CTCF/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CCAGGCGGCAGC-
TGGCCACCAGGGGGCGCTA