Information for 4-GCCGCGGCTC (Motif 7)


Reverse Opposite:

p-value:1e-12
log p-value:-2.959e+01
Information Content per bp:1.721
Number of Target Sequences with motif424.0
Percentage of Target Sequences with motif22.70%
Number of Background Sequences with motif7161.9
Percentage of Background Sequences with motif16.02%
Average Position of motif in Targets712.1 +/- 278.8bp
Average Position of motif in Background702.9 +/- 327.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCCGCGGCTC-
CAGGCCNNGGCCNN

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCCGCGGCTC-
GGCCCCGCCCCC

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCCGCGGCTC--
NNGGCCACGCCTTTN

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------GCCGCGGCTC
AGCAACAGCCGCACC--

MA0516.1_SP2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCGCGGCTC-----
GCCCCGCCCCCTCCC

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCCGCGGCTC
GCCMCRCCCH

MA0079.3_SP1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCCGCGGCTC-
GCCCCGCCCCC

MA0048.1_NHLH1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCCGCGGCTC---
-GCGCAGCTGCGT

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCCGCGGCTC
-----NGCTN

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCCGCGGCTC--
NAGCCCCGCCCCCN