Information for 6-TTGCCMAGAG (Motif 9)


Reverse Opposite:

p-value:1e-12
log p-value:-2.833e+01
Information Content per bp:1.700
Number of Target Sequences with motif317.0
Percentage of Target Sequences with motif16.97%
Number of Background Sequences with motif5036.0
Percentage of Background Sequences with motif11.27%
Average Position of motif in Targets516.9 +/- 288.3bp
Average Position of motif in Background539.8 +/- 308.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TTGCCMAGAG
TTGCCAAG--

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTGCCMAGAG
-TGCCAA---

MA0597.1_THAP1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGCCMAGAG
CTGCCCGCA-

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TTGCCMAGAG--
GGGTGTGCCCAAAAGG

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTGCCMAGAG----
NTGCCCANNGGTNA

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTGCCMAGAG
ATTTCCAAGAA

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGCCMAGAG----
CCGCCCAAGGGCAG

MA0154.2_EBF1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTGCCMAGAG-
GTCCCCAGGGA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTGCCMAGAG----
NTGCCCTAGGGCAA

MA0003.2_TFAP2A/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTGCCMAGAG------
-TGCCCTGAGGCANTN