Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1868)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44689)	% of Background Sequences with Motif
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-4	-1.123e+01	0.0035	781.0	41.81%	16517.0	36.96%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-4	-1.110e+01	0.0035	613.0	32.82%	12642.3	28.29%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-1.015e+01	0.0035	1314.0	70.34%	29472.7	65.94%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-9.197e+00	0.0067	778.0	41.65%	16692.1	37.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-3	-8.803e+00	0.0079	556.0	29.76%	11594.8	25.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-7.893e+00	0.0164	509.0	27.25%	10628.3	23.78%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-3	-7.782e+00	0.0164	800.0	42.83%	17400.9	38.93%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-7.560e+00	0.0172	260.0	13.92%	5078.4	11.36%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.539e+00	0.0172	127.0	6.80%	2236.2	5.00%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-7.458e+00	0.0172	799.0	42.77%	17423.6	38.98%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-7.357e+00	0.0172	294.0	15.74%	5846.7	13.08%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.197e+00	0.0172	401.0	21.47%	8257.2	18.47%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.763e+00	0.0235	1279.0	68.47%	29067.3	65.04%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-6.378e+00	0.0320	153.0	8.19%	2863.1	6.41%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-6.286e+00	0.0328	797.0	42.67%	17556.0	39.28%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-6.042e+00	0.0392	1070.0	57.28%	24106.7	53.94%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-5.663e+00	0.0539	1049.0	56.16%	23666.3	52.95%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-5.627e+00	0.0539	704.0	37.69%	15474.9	34.62%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-5.494e+00	0.0571	560.0	29.98%	12134.7	27.15%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.464e+00	0.0571	163.0	8.73%	3154.1	7.06%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.357e+00	0.0593	850.0	45.50%	18967.5	42.44%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-5.289e+00	0.0605	1520.0	81.37%	35262.4	78.90%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-5.253e+00	0.0605	256.0	13.70%	5226.1	11.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-5.144e+00	0.0642	127.0	6.80%	2405.2	5.38%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-5.143e+00	0.0642	1202.0	64.35%	27457.7	61.43%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-5.066e+00	0.0642	929.0	49.73%	20900.5	46.76%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-4.999e+00	0.0660	179.0	9.58%	3547.9	7.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-4.855e+00	0.0735	922.0	49.36%	20774.0	46.48%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2	-4.708e+00	0.0821	409.0	21.90%	8770.6	19.62%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-4.625e+00	0.0863	627.0	33.57%	13843.4	30.97%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-4.625e+00	0.0863	802.0	42.93%	17965.1	40.20%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-4.564e+00	0.0863	524.0	28.05%	11451.0	25.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.560e+00	0.0863	734.0	39.29%	16370.2	36.63%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.375e+00	0.0977	375.0	20.07%	8041.2	17.99%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-4.149e+00	0.1190	270.0	14.45%	5680.8	12.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.007e+00	0.1334	834.0	44.65%	18849.8	42.17%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-3.998e+00	0.1334	1260.0	67.45%	29088.9	65.08%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.969e+00	0.1334	59.0	3.16%	1053.5	2.36%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-3.946e+00	0.1334	451.0	24.14%	9865.4	22.07%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.925e+00	0.1334	791.0	42.34%	17846.3	39.93%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.867e+00	0.1347	250.0	13.38%	5266.2	11.78%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.841e+00	0.1350	618.0	33.08%	13782.1	30.84%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-1	-3.809e+00	0.1362	898.0	48.07%	20415.4	45.68%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.800e+00	0.1362	1071.0	57.33%	24560.1	54.95%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.786e+00	0.1362	563.0	30.14%	12504.5	27.98%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.618e+00	0.1540	608.0	32.55%	13593.9	30.42%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.577e+00	0.1570	81.0	4.34%	1546.2	3.46%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.537e+00	0.1600	441.0	23.61%	9708.2	21.72%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.527e+00	0.1600	42.0	2.25%	729.4	1.63%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.504e+00	0.1600	884.0	47.32%	20150.6	45.09%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.489e+00	0.1600	1241.0	66.43%	28737.0	64.30%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.319e+00	0.1837	924.0	49.46%	21148.1	47.32%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.273e+00	0.1887	397.0	21.25%	8737.9	19.55%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.249e+00	0.1898	510.0	27.30%	11375.0	25.45%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.222e+00	0.1914	135.0	7.23%	2764.7	6.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.197e+00	0.1927	730.0	39.08%	16564.6	37.06%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.170e+00	0.1945	338.0	18.09%	7391.3	16.54%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.167e+00	0.1945	1570.0	84.05%	36865.7	82.48%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.151e+00	0.1945	352.0	18.84%	7718.6	17.27%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.145e+00	0.1945	260.0	13.92%	5602.3	12.53%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.064e+00	0.2022	610.0	32.66%	13762.0	30.79%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.035e+00	0.2048	291.0	15.58%	6332.2	14.17%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.951e+00	0.2192	556.0	29.76%	12518.7	28.01%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.932e+00	0.2199	220.0	11.78%	4722.2	10.57%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-2.894e+00	0.2248	189.0	10.12%	4022.4	9.00%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-2.889e+00	0.2248	575.0	30.78%	12979.4	29.04%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.879e+00	0.2248	1047.0	56.05%	24204.3	54.16%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.848e+00	0.2249	814.0	43.58%	18644.3	41.72%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.766e+00	0.2407	194.0	10.39%	4155.7	9.30%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.749e+00	0.2412	495.0	26.50%	11133.3	24.91%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.743e+00	0.2412	445.0	23.82%	9964.8	22.30%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.741e+00	0.2412	276.0	14.78%	6039.5	13.51%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.729e+00	0.2412	1023.0	54.76%	23668.7	52.96%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.717e+00	0.2412	296.0	15.85%	6505.4	14.56%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.708e+00	0.2412	382.0	20.45%	8502.5	19.02%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.707e+00	0.2412	378.0	20.24%	8409.1	18.81%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.663e+00	0.2412	104.0	5.57%	2138.3	4.78%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.627e+00	0.2446	418.0	22.38%	9359.4	20.94%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.597e+00	0.2488	244.0	13.06%	5329.0	11.92%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.573e+00	0.2518	857.0	45.88%	19742.6	44.17%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.552e+00	0.2540	377.0	20.18%	8419.4	18.84%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.543e+00	0.2540	37.0	1.98%	685.4	1.53%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.534e+00	0.2540	94.0	5.03%	1930.9	4.32%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.522e+00	0.2540	646.0	34.58%	14746.8	32.99%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.489e+00	0.2576	953.0	51.02%	22058.0	49.35%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.489e+00	0.2576	882.0	47.22%	20362.6	45.56%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.485e+00	0.2576	381.0	20.40%	8528.0	19.08%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.484e+00	0.2576	347.0	18.58%	7735.0	17.31%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.434e+00	0.2601	106.0	5.67%	2210.0	4.94%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.381e+00	0.2713	355.0	19.00%	7944.9	17.78%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.372e+00	0.2713	86.0	4.60%	1770.5	3.96%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.336e+00	0.2775	41.0	2.19%	785.0	1.76%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.303e+00	0.2838	350.0	18.74%	7845.3	17.55%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.201e+00	0.3110	1472.0	78.80%	34670.1	77.57%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.179e+00	0.3144	70.0	3.75%	1435.9	3.21%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.176e+00	0.3144	329.0	17.61%	7384.4	16.52%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.170e+00	0.3144	442.0	23.66%	10031.9	22.45%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.140e+00	0.3171	118.0	6.32%	2520.7	5.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.130e+00	0.3171	19.0	1.02%	333.5	0.75%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.129e+00	0.3171	1427.0	76.39%	33593.3	75.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.123e+00	0.3171	1345.0	72.00%	31604.5	70.71%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.114e+00	0.3171	12.0	0.64%	192.2	0.43%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.103e+00	0.3171	915.0	48.98%	21266.6	47.58%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.082e+00	0.3171	103.0	5.51%	2188.7	4.90%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.064e+00	0.3192	182.0	9.74%	3997.2	8.94%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.038e+00	0.3244	483.0	25.86%	11031.1	24.68%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.031e+00	0.3244	113.0	6.05%	2423.0	5.42%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.923e+00	0.3573	492.0	26.34%	11276.0	25.23%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.872e+00	0.3724	233.0	12.47%	5216.7	11.67%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.867e+00	0.3724	961.0	51.45%	22444.9	50.22%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.860e+00	0.3724	364.0	19.49%	8281.3	18.53%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.842e+00	0.3736	9.0	0.48%	143.8	0.32%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.822e+00	0.3776	28.0	1.50%	543.8	1.22%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.774e+00	0.3930	307.0	16.43%	6967.9	15.59%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.770e+00	0.3930	101.0	5.41%	2187.7	4.89%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.752e+00	0.3948	854.0	45.72%	19927.2	44.59%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.738e+00	0.3969	239.0	12.79%	5386.9	12.05%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.728e+00	0.3973	387.0	20.72%	8858.9	19.82%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.701e+00	0.4050	127.0	6.80%	2796.0	6.26%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.671e+00	0.4138	402.0	21.52%	9228.1	20.65%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.647e+00	0.4204	10.0	0.54%	171.6	0.38%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.634e+00	0.4223	675.0	36.13%	15705.4	35.14%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.623e+00	0.4234	336.0	17.99%	7688.2	17.20%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.609e+00	0.4259	738.0	39.51%	17213.4	38.51%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.599e+00	0.4267	277.0	14.83%	6310.0	14.12%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.564e+00	0.4383	327.0	17.51%	7493.6	16.77%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.547e+00	0.4424	298.0	15.95%	6816.9	15.25%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.543e+00	0.4424	208.0	11.13%	4708.8	10.54%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.536e+00	0.4424	269.0	14.40%	6138.9	13.74%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.506e+00	0.4506	327.0	17.51%	7510.4	16.80%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.501e+00	0.4506	266.0	14.24%	6077.9	13.60%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.482e+00	0.4546	504.0	26.98%	11700.1	26.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.475e+00	0.4546	49.0	2.62%	1043.9	2.34%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.441e+00	0.4664	216.0	11.56%	4920.4	11.01%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.437e+00	0.4664	189.0	10.12%	4289.0	9.60%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.432e+00	0.4664	280.0	14.99%	6425.7	14.38%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.418e+00	0.4669	238.0	12.74%	5442.1	12.18%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.373e+00	0.4849	15.0	0.80%	292.2	0.65%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.372e+00	0.4849	998.0	53.43%	23516.9	52.62%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.326e+00	0.5010	419.0	22.43%	9741.6	21.80%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.321e+00	0.5010	313.0	16.76%	7237.0	16.19%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.293e+00	0.5100	207.0	11.08%	4747.4	10.62%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.290e+00	0.5100	435.0	23.29%	10133.8	22.67%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.288e+00	0.5100	138.0	7.39%	3131.9	7.01%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.281e+00	0.5100	269.0	14.40%	6210.7	13.90%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.258e+00	0.5137	40.0	2.14%	864.9	1.94%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.227e+00	0.5265	87.0	4.66%	1954.6	4.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.210e+00	0.5318	117.0	6.26%	2657.5	5.95%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.149e+00	0.5618	88.0	4.71%	1992.3	4.46%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.135e+00	0.5657	97.0	5.19%	2205.4	4.93%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.118e+00	0.5716	123.0	6.58%	2818.9	6.31%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.107e+00	0.5743	414.0	22.16%	9704.8	21.71%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.093e+00	0.5782	86.0	4.60%	1956.8	4.38%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.054e+00	0.5977	486.0	26.02%	11438.4	25.59%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.044e+00	0.5999	314.0	16.81%	7354.2	16.45%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.041e+00	0.5999	205.0	10.97%	4772.7	10.68%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.034e+00	0.5999	125.0	6.69%	2885.8	6.46%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.028e+00	0.5999	837.0	44.81%	19823.8	44.35%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.018e+00	0.6002	70.0	3.75%	1596.6	3.57%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.007e+00	0.6030	47.0	2.52%	1060.9	2.37%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.004e+00	0.6030	139.0	7.44%	3223.9	7.21%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.985e-01	0.6030	120.0	6.42%	2776.3	6.21%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.951e-01	0.6030	843.0	45.13%	19983.4	44.71%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.813e-01	0.6034	198.0	10.60%	4625.8	10.35%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.451e-01	0.6218	52.0	2.78%	1187.5	2.66%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.434e-01	0.6218	149.0	7.98%	3476.8	7.78%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-8.753e-01	0.6588	384.0	20.56%	9088.2	20.33%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.712e-01	0.6588	371.0	19.86%	8780.2	19.65%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.509e-01	0.6670	54.0	2.89%	1252.0	2.80%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.334e-01	0.6749	55.0	2.94%	1278.8	2.86%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.289e-01	0.6749	64.0	3.43%	1492.7	3.34%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.267e-01	0.6749	915.0	48.98%	21797.8	48.77%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.915e-01	0.6916	8.0	0.43%	175.9	0.39%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.895e-01	0.6916	444.0	23.77%	10561.1	23.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.845e-01	0.6916	820.0	43.90%	19550.5	43.74%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.216e-01	0.7290	203.0	10.87%	4836.6	10.82%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.130e-01	0.7311	440.0	23.55%	10506.3	23.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.076e-01	0.7311	609.0	32.60%	14551.9	32.56%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.934e-01	0.7373	30.0	1.61%	709.2	1.59%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.610e-01	0.7573	203.0	10.87%	4862.0	10.88%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.559e-01	0.7573	430.0	23.02%	10299.7	23.04%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.536e-01	0.7573	75.0	4.01%	1796.3	4.02%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.289e-01	0.7692	197.0	10.55%	4731.1	10.59%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.124e-01	0.7778	240.0	12.85%	5770.0	12.91%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.023e-01	0.7814	1202.0	64.35%	28806.0	64.45%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.999e-01	0.7814	88.0	4.71%	2124.3	4.75%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.987e-01	0.7814	83.0	4.44%	2004.6	4.49%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.951e-01	0.7814	316.0	16.92%	7602.7	17.01%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.704e-01	0.7896	151.0	8.08%	3651.4	8.17%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.347e-01	0.8140	55.0	2.94%	1346.5	3.01%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.346e-01	0.8140	370.0	19.81%	8934.7	19.99%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.311e-01	0.8140	9.0	0.48%	223.6	0.50%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.269e-01	0.8140	172.0	9.21%	4176.2	9.34%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.073e-01	0.8194	89.0	4.76%	2179.9	4.88%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.051e-01	0.8194	124.0	6.64%	3027.9	6.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.950e-01	0.8210	139.0	7.44%	3394.6	7.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.780e-01	0.8309	258.0	13.81%	6275.3	14.04%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-4.637e-01	0.8386	92.0	4.93%	2268.2	5.07%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.603e-01	0.8386	244.0	13.06%	5948.8	13.31%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.419e-01	0.8485	324.0	17.34%	7889.0	17.65%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.387e-01	0.8485	65.0	3.48%	1619.3	3.62%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.366e-01	0.8485	23.0	1.23%	586.2	1.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.213e-01	0.8533	92.0	4.93%	2285.3	5.11%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.078e-01	0.8607	69.0	3.69%	1728.9	3.87%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.938e-01	0.8686	280.0	14.99%	6861.4	15.35%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.887e-01	0.8688	250.0	13.38%	6139.0	13.74%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.842e-01	0.8688	78.0	4.18%	1958.8	4.38%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.752e-01	0.8722	267.0	14.29%	6560.5	14.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.617e-01	0.8798	130.0	6.96%	3241.8	7.25%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.168e-01	0.9158	18.0	0.96%	487.6	1.09%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.098e-01	0.9179	80.0	4.28%	2041.0	4.57%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.720e-01	0.9487	35.0	1.87%	934.1	2.09%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.675e-01	0.9487	18.0	0.96%	500.6	1.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.564e-01	0.9546	10.0	0.54%	292.6	0.65%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.535e-01	0.9546	639.0	34.21%	15659.8	35.04%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.516e-01	0.9546	71.0	3.80%	1849.0	4.14%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.323e-01	0.9644	92.0	4.93%	2383.6	5.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.724e-01	1.0000	387.0	20.72%	9682.2	21.66%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.592e-01	1.0000	13.0	0.70%	402.1	0.90%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.460e-01	1.0000	399.0	21.36%	10017.3	22.41%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.355e-01	1.0000	30.0	1.61%	871.0	1.95%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.355e-01	1.0000	30.0	1.61%	871.0	1.95%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.297e-01	1.0000	624.0	33.40%	15503.9	34.69%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.128e-01	1.0000	82.0	4.39%	2233.4	5.00%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.087e-01	1.0000	403.0	21.57%	10188.5	22.80%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.994e-02	1.0000	87.0	4.66%	2376.1	5.32%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-9.981e-02	1.0000	154.0	8.24%	4067.1	9.10%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.251e-02	1.0000	263.0	14.08%	6789.7	15.19%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.902e-02	1.0000	230.0	12.31%	5980.6	13.38%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.078e-02	1.0000	88.0	4.71%	2445.3	5.47%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.356e-02	1.0000	148.0	7.92%	3987.9	8.92%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.008e-02	1.0000	332.0	17.77%	8579.0	19.19%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.884e-02	1.0000	94.0	5.03%	2622.7	5.87%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.309e-02	1.0000	24.0	1.28%	779.3	1.74%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.206e-02	1.0000	964.0	51.61%	23915.8	53.51%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.170e-02	1.0000	190.0	10.17%	5077.5	11.36%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.800e-02	1.0000	1158.0	61.99%	28546.1	63.87%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.186e-02	1.0000	159.0	8.51%	4327.1	9.68%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-4.155e-02	1.0000	876.0	46.90%	21866.3	48.92%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.960e-02	1.0000	182.0	9.74%	5019.1	11.23%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.841e-02	1.0000	145.0	7.76%	4080.3	9.13%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.753e-02	1.0000	199.0	10.65%	5467.7	12.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.612e-02	1.0000	768.0	41.11%	19484.0	43.59%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.290e-02	1.0000	68.0	3.64%	2096.9	4.69%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.095e-02	1.0000	702.0	37.58%	17967.9	40.20%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.664e-03	1.0000	904.0	48.39%	23033.0	51.53%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.364e-03	1.0000	599.0	32.07%	15734.9	35.21%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.961e-03	1.0000	170.0	9.10%	4988.9	11.16%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.608e-03	1.0000	716.0	38.33%	18646.8	41.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.343e-03	1.0000	831.0	44.49%	21451.5	48.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.148e-03	1.0000	19.0	1.02%	843.4	1.89%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.430e-04	1.0000	58.0	3.10%	2021.3	4.52%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-5.540e-04	1.0000	449.0	24.04%	12246.2	27.40%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.940e-04	1.0000	246.0	13.17%	7115.8	15.92%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.290e-04	1.0000	387.0	20.72%	10759.1	24.07%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.020e-04	1.0000	55.0	2.94%	2009.6	4.50%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.340e-04	1.0000	242.0	12.96%	7150.7	16.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-8.400e-05	1.0000	60.0	3.21%	2235.7	5.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.300e-05	1.0000	653.0	34.96%	17555.3	39.28%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.000e-06	1.0000	820.0	43.90%	22174.4	49.61%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	553.0	29.60%	15958.0	35.70%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	571.0	30.57%	16495.3	36.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	486.0	26.02%	14641.9	32.76%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	287.0	15.36%	9774.1	21.87%