Information for 9-CGTGACCTTCGG (Motif 11)


Reverse Opposite:

p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.821
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif61.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets653.4 +/- 292.8bp
Average Position of motif in Background619.0 +/- 332.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0592.1_ESRRA/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CGTGACCTTCGG
NGTGACCTTGG-

MA0160.1_NR4A2/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTTCGG
-GTGACCTT---

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CGTGACCTTCGG
-NTGACCTTGA-

MA0141.2_Esrrb/Jaspar

Match Rank:4
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTTCGG--
--TGACCTTGANNN

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTTCGG--
NNNGTGACCTTTGNNN

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CGTGACCTTCGG--
NNNNATGACCTTGANTN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CGTGACCTTCGG--
NNNNTGACCTTTNNNN

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTTCGG
--TGACCTTGAV

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CGTGACCTTCGG
-CTGACCTTTG-

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CGTGACCTTCGG
--TGACCTTGAN