Information for 6-CGCGGATCGA (Motif 12)


Reverse Opposite:

p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.968
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets738.2 +/- 223.2bp
Average Position of motif in Background814.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCGGATCGA---
---DGATCRATAN

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGCGGATCGA--
GCCGCGCAGTGCGT

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGCGGATCGA
--CGGAGC--

PB0034.1_Irf4_1/Jaspar

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CGCGGATCGA-------
--CGTATCGAAACCAAA

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CGCGGATCGA-
TCGTACCCGCATCATT

MA0056.1_MZF1_1-4/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CGCGGATCGA
TGGGGA----

MA0130.1_ZNF354C/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGCGGATCGA
-GTGGAT---

PB0105.1_Arid3a_2/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CGCGGATCGA----
ACCCGTATCAAATTT

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.48
Offset:2
Orientation:forward strand
Alignment:CGCGGATCGA---------
--CTGATCGAAACCAAAGT

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:10
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--CGCGGATCGA-----
NTNNCGTATCCAAGTNN