Information for 12-ACSTGGCCAGAG (Motif 18)


Reverse Opposite:

p-value:1e-9
log p-value:-2.277e+01
Information Content per bp:1.837
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif78.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets495.6 +/- 298.6bp
Average Position of motif in Background592.7 +/- 299.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.37
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0104.3_Mycn/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACSTGGCCAGAG
CACGTGGC-----

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACSTGGCCAGAG
TCACGTGACC----

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACSTGGCCAGAG
CACGTGGN-----

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACSTGGCCAGAG
CCACGTGGNN----

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACSTGGCCAGAG
ACCACGTGGTNN---

MA0059.1_MYC::MAX/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ACSTGGCCAGAG
GACCACGTGGT-----

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACSTGGCCAGAG
CCACGTGGNN----

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACSTGGCCAGAG
CACGTGDC-----

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACSTGGCCAGAG
NNCACCTGNN-----

MA0004.1_Arnt/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACSTGGCCAGAG
CACGTG-------