Information for 13-CACACAGCCGWT (Motif 19)


Reverse Opposite:

p-value:1e-9
log p-value:-2.262e+01
Information Content per bp:1.595
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif55.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets608.3 +/- 283.9bp
Average Position of motif in Background550.7 +/- 279.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CACACAGCCGWT
--CACAGN----

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CACACAGCCGWT-
---ACAGCTGTTV

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CACACAGCCGWT-
---NCAGCTGCTG

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CACACAGCCGWT
----CAGCTGTT

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACACAGCCGWT-
---HCAGCTGDTN

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACACAGCCGWT--
--AGCAGCTGCTNN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CACACAGCCGWT
CACGCA------

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CACACAGCCGWT-
---ACAGCTGTTN

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CACACAGCCGWT
GCACGTACCC---

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CACACAGCCGWT
----CAGCC---