Information for 10-ATGCTCGGAT (Motif 20)


Reverse Opposite:

p-value:1e-9
log p-value:-2.246e+01
Information Content per bp:1.623
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif228.7
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets706.1 +/- 252.0bp
Average Position of motif in Background657.7 +/- 288.3bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATGCTCGGAT--
AGTATTCTCGGTTGC

PB0115.1_Ehf_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATGCTCGGAT------
AAGATCGGAANTNNNA

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATGCTCGGAT--
NNAATTCTCGNTNAN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATGCTCGGAT
TBGCACGCAA

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ATGCTCGGAT--
RGSMTBCTGGGAAAT

PB0075.1_Sp100_1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATGCTCGGAT---
ATTTTACGGAAAAT

MA0144.2_STAT3/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATGCTCGGAT-
CTTCTGGGAAA

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ATGCTCGGAT---
---RCCGGAARYN

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ATGCTCGGAT--
NGTCACGCTTGGCTGC

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---ATGCTCGGAT--
ACCACTCTCGGTCAC