Information for 15-TGTCGTTTCTGC (Motif 25)


Reverse Opposite:

p-value:1e-8
log p-value:-2.060e+01
Information Content per bp:1.697
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif779.6
Percentage of Background Sequences with motif1.86%
Average Position of motif in Targets475.4 +/- 294.1bp
Average Position of motif in Background515.8 +/- 309.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGTCGTTTCTGC
ACTTTCGTTTCT--

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGTTTCTGC
NNTGTGGTTT----

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGTCGTTTCTGC
CTGTGGTTTN---

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGTCGTTTCTGC
GTTTCACTTCCG-

PB0033.1_Irf3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTCGTTTCTGC
CAGTTTCGNTTCTN-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGTCGTTTCTGC
GCTGTGGTTT----

MA0002.2_RUNX1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGTCGTTTCTGC
GTCTGTGGTTT----

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGTCGTTTCTGC
NNHTGTGGTTWN---

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------TGTCGTTTCTGC
GGGGTTTGTGGTTTG---

PB0037.1_Isgf3g_1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGTCGTTTCTGC
TNAGTTTCGATTTTN-