Information for 17-CGCCATCCCGCC (Motif 27)


Reverse Opposite:

p-value:1e-8
log p-value:-2.026e+01
Information Content per bp:1.532
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif318.4
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets748.9 +/- 258.9bp
Average Position of motif in Background754.9 +/- 344.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0470.1_E2F4/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CGCCATCCCGCC-
--NNTTCCCGCCC

MA0471.1_E2F6/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CGCCATCCCGCC-
--NCTTCCCGCCC

MA0024.2_E2F1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGCCATCCCGCC--
---CCTCCCGCCCN

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGCCATCCCGCC------
-TACGCCCCGCCACTCTG

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGCCATCCCGCC
--NYTTCCCGCC

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CGCCATCCCGCC--
----TTCCCGCCWG

MA0469.1_E2F3/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CGCCATCCCGCC-------
----CTCCCGCCCCCACTC

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGCCATCCCGCC-
-VDTTTCCCGCCA

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGCCATCCCGCC
--DTTTCCCGCC

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGCCATCCCGCC
----AGCGCGCC