Information for 19-ATTGGTCGCGTC (Motif 30)


Reverse Opposite:

p-value:1e-8
log p-value:-1.942e+01
Information Content per bp:1.873
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets913.5 +/- 79.6bp
Average Position of motif in Background905.9 +/- 141.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0502.1_NFYB/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGTCGCGTC
CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATTGGTCGCGTC
TGATTGGCTANN--

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGTCGCGTC
CCGATTGGCT-----

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.58
Offset:-9
Orientation:forward strand
Alignment:---------ATTGGTCGCGTC
AGAGTGCTGATTGGTCCA---

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATTGGTCGCGTC
CCATTGTTC-----

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ATTGGTCGCGTC
NNAATTAGTCACGGT

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ATTGGTCGCGTC
ATTGTTA-----

PH0026.1_Duxbl/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ATTGGTCGCGTC-
NNNNGTTGATTGGGTCG

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------ATTGGTCGCGTC
ANCGCTAATTGGTCTNN--

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----ATTGGTCGCGTC
AATCAATTGTTCCGCTA