Information for 20-AGGTTACTTA (Motif 32)


Reverse Opposite:

p-value:1e-7
log p-value:-1.633e+01
Information Content per bp:1.915
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif402.1
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets502.8 +/- 296.5bp
Average Position of motif in Background510.9 +/- 310.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:AGGTTACTTA
---ATACTTA

MA0025.1_NFIL3/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGGTTACTTA-
ANGTTACATAA

PH0174.1_Vax1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTTACTTA------
ACGTTAATTAACCCAG

PH0036.1_Gsx2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGTTACTTA------
AGGTTAATTAGCTGAT

MA0043.1_HLF/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGGTTACTTA---
-GGTTACGCAATA

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGTTACTTA------
ACGGTAATTAGCTCAT

MA0046.1_HNF1A/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGGTTACTTA-----
-GGTTAATAATTAAC

PH0052.1_Hoxa5/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGTTACTTA------
ACGGTAATTAGCTCAG

MA0160.1_NR4A2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGTTACTTA
AAGGTCAC---

PH0079.1_Hoxd3/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGTTACTTA------
ANGNTAATTANCNCAN