Information for 20-MGCACGTCCGCA (Motif 34)


Reverse Opposite:

p-value:1e-6
log p-value:-1.553e+01
Information Content per bp:1.813
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif35.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets807.9 +/- 263.1bp
Average Position of motif in Background772.9 +/- 357.3bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:MGCACGTCCGCA
-TAACGTCCGC-

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:MGCACGTCCGCA
-GCACGTNC---

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:MGCACGTCCGCA
-GCACGTACCC-

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:MGCACGTCCGCA
-GCACGTAY---

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:MGCACGTCCGCA
BGCACGTA----

MA0464.1_Bhlhe40/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-MGCACGTCCGCA
NTGCACGTGAG--

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:MGCACGTCCGCA----
GGGCCGTGTGCAAAAA

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:MGCACGTCCGCA
-VBSYGTCTGG-

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:MGCACGTCCGCA
-KCACGTGMCN-

PB0043.1_Max_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----MGCACGTCCGCA
CCNNANCACGTGGTCN